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SRX2449681: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 176,957 spots, 77.6M bases, 39.7Mb downloads

External Id: EXT00234919
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Virginia - Division of Consolidated Laboratory Services
PRJNA323586 • SRP080844 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.
Sample:
SAMN05560065 • SRS1883005 • All experiments • All runs
Organism: Campylobacter jejuni
Library:
Name: Campylobacter jejuni Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 176,957 spots, 77.6M bases, 39.7Mb
Run# of Spots# of BasesSizePublished
SRR5134391176,95777.6M39.7Mb2016-12-29

ID:
3558111

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